##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane3_Index18_2.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	18872182	
Filtered Sequences	0	
Sequence length	90	
%GC	50	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	31.923521562053608	33.0	31.0	34.0	30.0	34.0
2	32.04753668653683	33.0	31.0	34.0	30.0	34.0
3	32.11444569578653	34.0	31.0	34.0	30.0	34.0
4	35.63249872219333	37.0	35.0	37.0	33.0	37.0
5	35.587919086409826	37.0	35.0	37.0	33.0	37.0
6	35.55542761298084	37.0	35.0	37.0	33.0	37.0
7	35.57226906777393	37.0	35.0	37.0	33.0	37.0
8	35.55602288066107	37.0	35.0	37.0	33.0	37.0
9	37.215218780743	39.0	37.0	39.0	33.0	39.0
10-14	37.395371494403776	39.2	37.2	39.4	33.0	39.4
15-19	38.30424032578745	40.0	38.0	41.0	33.0	41.0
20-24	38.106444734371465	40.0	38.0	41.0	33.0	41.0
25-29	37.786121604804364	40.0	37.2	41.0	32.0	41.0
30-34	37.57960203012031	39.8	37.0	41.0	31.8	41.0
35-39	37.54461716191588	40.0	37.0	41.0	31.4	41.0
40-44	37.217433755142885	39.2	36.0	41.0	31.0	41.0
45-49	36.75370799200644	39.0	35.0	40.6	30.0	41.0
50-54	36.41954979026802	38.6	35.0	40.0	30.0	41.0
55-59	36.11839282813191	38.0	34.8	40.0	29.6	41.0
60-64	35.29507784526452	36.6	34.0	39.8	28.4	41.0
65-69	34.406768978807	35.4	33.4	39.0	27.6	40.8
70-74	33.48549111067284	35.0	33.0	37.4	26.0	39.8
75-79	32.521687327941194	35.0	32.0	36.2	25.4	38.8
80-84	31.553796068732275	34.6	31.2	35.0	23.6	37.0
85-89	30.432550268962007	34.0	31.0	35.0	16.2	36.0
90	29.483395454749218	34.0	30.0	35.0	2.0	35.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
9	1.0
10	284.0
11	2334.0
12	7047.0
13	13982.0
14	22376.0
15	30638.0
16	38194.0
17	44700.0
18	51212.0
19	59031.0
20	68666.0
21	80149.0
22	92917.0
23	110118.0
24	132157.0
25	157245.0
26	188573.0
27	227753.0
28	275580.0
29	335872.0
30	411477.0
31	509087.0
32	640838.0
33	827407.0
34	1121552.0
35	1616565.0
36	2471248.0
37	3498402.0
38	3780349.0
39	2013424.0
40	43004.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	23.76885195363207	11.801947437768458	9.333382859491287	55.09581774910819
2	21.263727549064708	18.493366829638518	36.80021010528634	23.442695516010435
3	25.51317439031327	20.830984712659504	22.162204026747585	31.493636870279644
4	27.744026756635776	26.98189075504629	18.811139084505925	26.462943403812012
5	29.467210038367377	29.390545264553374	21.409875898698598	19.732368798380655
6	24.647462040406577	32.06430937619763	21.81513966281503	21.473088920580764
7	21.823027938329744	18.609930028178347	36.905865792718	22.661176240773912
8	21.537259471498263	21.891042111628575	29.221023715821588	27.350674701051574
9	21.537121984077093	20.785717658271917	31.660042587491922	26.01711777015907
10-14	24.76113017766612	25.882447531574016	24.434410006787736	24.92201228397213
15-19	25.159012832025457	24.86480799920375	24.790103930809693	25.186075237961102
20-24	24.92213153792032	25.10188086121327	25.211539480054583	24.764448120811828
25-29	24.75056707967243	25.129181189201816	25.15812787348541	24.962123857640346
30-34	24.84166034503587	25.04294034888195	25.064754718075406	25.050644588006776
35-39	24.815161191218102	25.23098068177757	25.03552766305811	24.918330463946216
40-44	24.81185619133533	25.033037894152223	25.201727558339353	24.953378356173094
45-49	24.739761506652876	25.098881555866758	25.09484702306375	25.066509914416613
50-54	24.763386331368515	25.19353770084813	25.151530511766744	24.89154545601661
55-59	24.7858533028544	25.112688847411064	25.085067852606326	25.016389997128215
60-64	24.70352364682828	25.14046372125025	25.185366075744476	24.97064655617699
65-69	24.748219102322583	25.266834319758974	25.167915314122318	24.81703126379612
70-74	24.79496134628115	25.19693229816441	25.05485540811552	24.953250947438914
75-79	24.80066558363673	25.139130543804395	25.1325597462748	24.927644126284072
80-84	24.714704802437986	25.274917840091238	25.160918456331622	24.84945890113916
85-89	24.855016318026337	25.243241141453975	25.051139120674083	24.8506034198456
90	24.551840872163332	25.37085065813949	25.279472131748726	24.797836337948453
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	78.86466970274026
2	44.70642306507514
3	57.00681126059292
4	54.20697016044779
5	49.19957883674803
6	46.12055096098734
7	44.484204179103656
8	48.88793417254984
9	47.554239754236164
10-14	49.68314246163825
15-19	50.34508806998655
20-24	49.68657965873214
25-29	49.71269093731278
30-34	49.892304933042645
35-39	49.73349165516432
40-44	49.76523454750842
45-49	49.80627142106949
50-54	49.654931787385124
55-59	49.802243299982614
60-64	49.674170203005275
65-69	49.565250366118704
70-74	49.74821229372006
75-79	49.7283097099208
80-84	49.564163703577144
85-89	49.70561973787194
90	49.349677210111786
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	57.0
1	29.5
2	3.5
3	4.0
4	4.5
5	9.5
6	11.5
7	10.5
8	19.0
9	35.0
10	43.0
11	60.0
12	106.0
13	181.5
14	293.0
15	474.0
16	865.0
17	1476.0
18	2533.0
19	4543.5
20	5833.0
21	8065.5
22	13562.5
23	21877.0
24	33390.5
25	49334.5
26	70758.0
27	97713.0
28	127661.0
29	160164.5
30	177732.0
31	195104.0
32	231436.0
33	271912.5
34	315817.0
35	358482.0
36	401664.5
37	451680.5
38	495823.0
39	530889.5
40	548924.0
41	561138.0
42	586512.0
43	611540.5
44	628057.0
45	634632.5
46	635938.5
47	635331.0
48	637137.5
49	639132.0
50	639334.0
51	634367.0
52	630511.5
53	623993.5
54	620668.5
55	623854.5
56	618997.5
57	609449.0
58	592447.0
59	570059.0
60	558863.0
61	545069.0
62	516091.0
63	479997.0
64	435671.0
65	388287.0
66	339098.5
67	288556.5
68	242085.0
69	197791.0
70	174647.0
71	154849.5
72	117808.0
73	86163.0
74	59278.5
75	37320.5
76	22131.5
77	12149.0
78	5751.5
79	2505.5
80	1389.0
81	995.5
82	423.0
83	176.0
84	91.5
85	46.5
86	18.5
87	15.0
88	9.0
89	5.5
90	4.0
91	3.0
92	2.0
93	1.0
94	0.5
95	0.5
96	0.0
97	0.0
98	0.0
99	1.0
100	2.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.0
2	0.008705935540469036
3	0.04383700835441286
4	0.04358796455015111
5	0.043651550202303054
6	0.008425098910131325
7	0.01446043706021911
8	0.011238764017854426
9	0.007328246410510454
10-14	0.01042062862683287
15-19	0.009134078931625395
20-24	0.012438413321787592
25-29	0.004959680867850893
30-34	0.010868907474504008
35-39	0.0066404616064003625
40-44	0.001948900238456793
45-49	5.743903911058086E-4
50-54	9.230517170722495E-4
55-59	0.0016193146081359326
60-64	6.37976043257743E-4
65-69	0.0073642782800632176
70-74	0.003018198955478492
75-79	0.0042634179767872095
80-84	0.0017252906950558234
85-89	0.0012219042821863418
90	0.012303823691399332
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	1.8872182E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	52.986236532353495
#Duplication Level	Relative count
1	100.0
2	29.85520242110519
3	15.45390627388243
4	9.538706094541304
5	6.579577529372204
6	4.72095132315029
7	3.6754740821504632
8	2.9265210878669614
9	2.417029255021042
10++	28.629365071277906
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCAGG	4153865	2.6298842	5.4194555	1
CCTGG	4114450	2.5847652	5.958221	1
CTTCT	4129120	2.5233939	6.2016983	1
CTGGA	3839145	2.4478116	9.479235	1
TCCAG	3789460	2.3663046	6.14781	2
CTGCT	3745675	2.3208575	5.4800053	1
CTCCT	3816265	2.3158305	8.744949	1
CTGGG	3536175	2.2682617	8.906035	1
CAGGA	3507685	2.253923	5.6053762	1
CTTCA	3594015	2.2135143	6.2800164	1
CTCCA	3556525	2.1750488	9.038092	1
CCCAG	3478980	2.1571784	7.5715933	1
CAGAA	3251715	2.0768971	5.0846014	1
CTCTG	3231040	2.0019846	6.877925	1
CTGCA	3166885	1.9775417	5.249587	1
CTTCC	3203785	1.9441582	5.124757	1
CTGGC	3013500	1.8931302	5.7974353	1
TGGAA	2877835	1.862274	5.427578	2
CTGAA	2898100	1.8367113	6.038096	1
CTTTT	2941135	1.8100965	5.2978005	1
CTGAG	2711220	1.7286546	5.3159738	1
CTCAG	2761720	1.7245388	6.8687286	1
CTTTG	2721215	1.698011	5.420775	1
CTGGT	2656120	1.6804137	5.5926785	1
CTTGG	2587200	1.636811	5.733373	1
CTCCC	2547490	1.5350461	5.6382775	1
>>END_MODULE
